PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00234.1_g00026.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 346aa    MW: 39932 Da    PI: 6.6123
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00234.1_g00026.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.4e-181461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT eEd++l+d+++++G g+W+t ++  g+ R++k+c++rw +yl
  Rsa1.0_00234.1_g00026.1 14 KGPWTSEEDQKLLDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61
                             79********************************************97 PP

2Myb_DNA-binding51.91.7e-1667111147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
  Rsa1.0_00234.1_g00026.1  67 RGRFSFEEEEAIIQLHSFLGNK-WSAIAARLP-GRTDNEIKNFWNTH 111
                              89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-26564IPR009057Homeodomain-like
PROSITE profilePS5129424.538965IPR017930Myb domain
SuperFamilySSF466892.43E-3111108IPR009057Homeodomain-like
SMARTSM007174.8E-131363IPR001005SANT/Myb domain
PfamPF002494.1E-161461IPR001005SANT/Myb domain
CDDcd001673.17E-121661No hitNo description
Gene3DG3DSA:1.10.10.605.9E-2665116IPR009057Homeodomain-like
PROSITE profilePS5129419.54266116IPR017930Myb domain
SMARTSM007176.5E-1666114IPR001005SANT/Myb domain
PfamPF002499.7E-1567111IPR001005SANT/Myb domain
CDDcd001677.03E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGRSPCCEKN GLKKGPWTSE EDQKLLDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEEAIIQ LHSFLGNKWS AIAARLPGRT DNEIKNFWNT HIRKKLLRMG  120
IDPTTHNPRL DLLDISSILA SSLYNSSSHH VNMSRVMMDA HHPQQHNPLV NPEILKFANS  180
LFSQDQDHNH NHNHNQNRNQ NFLVNHDSKT HENYTVNHDD NQTGVNQYQT NHHEIQYCLP  240
PFPDEAHFND TDHNGEHMFA SNSNMSVQDC NTASSSFVFD HSYLDHNFNI AYSVMNTPSS  300
NPTLNSSVTT YINSSSCSTE DEMESYCSNL MKFDISDFLD VNDFII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-30121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0872521e-175AY087252.1 Arabidopsis thaliana clone 33333 mRNA, complete sequence.
GenBankAY5196071e-175AY519607.1 Arabidopsis thaliana MYB transcription factor (At4g21440) mRNA, complete cds.
GenBankBT0012351e-175BT001235.1 Arabidopsis thaliana myb-related protein M4 (At4g21440) mRNA, complete cds.
GenBankX903821e-175X90382.2 Arabidopsis thaliana mRNA for putative transcription factor (MYB102 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626994.10.0PREDICTED: myb-related protein 315-like
TrEMBLA0A078ICP00.0A0A078ICP0_BRANA; BnaC03g64160D protein
STRINGBra020892.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-152MYB-like 102